Database
The HTLV Molecular Epidemiology Database concentrates nucleotides sequences information extracted from GenBank along data gathered from it's respective articles, compiling clinical, geographical, phylogenetics and epidemiological data.
Interface
This tool is integrated with HTLV 1-4 Typing Tool and HTLV 1 & 2 Genotype Tool, allowing user to exchange data between applications, for exemple, to use sequences from Database to perform phylogenetic reconstruction on Typing Tool.
Up to date
Through a internal mecanism of automatic sequence download from Genbank, it is simpler to database curators to obtain new sequences and keep database always up to date.
How to cite
Manuscript in preparation.
For the mean time, please cite:
ARAUJO, T. H. A. et al. A public HTLV-1 molecular epidemiology database for sequence management and data mining. PLoS ONE, v. 7, n. 9, p. 7?10, 2012.
URL: http://dx.doi.org/10.1371/journal.pone.0042123
For the mean time, please cite:
ARAUJO, T. H. A. et al. A public HTLV-1 molecular epidemiology database for sequence management and data mining. PLoS ONE, v. 7, n. 9, p. 7?10, 2012.
URL: http://dx.doi.org/10.1371/journal.pone.0042123
HTLV-1 Orfs maps
Fully Annotated Genome Sequence of HTLV-1:
BARRETO. F. K. et al. A Fully Annotated Genome Sequence of Human T-Cell Lymphotropic Virus Type 1 (HTLV-1). Journal of Bioinformatics Computational and Systems Biology, v. 1, n. 1, p. 105, 2017.
URL: https://www.arca.fiocruz.br/handle/icict/21100
BARRETO. F. K. et al. A Fully Annotated Genome Sequence of Human T-Cell Lymphotropic Virus Type 1 (HTLV-1). Journal of Bioinformatics Computational and Systems Biology, v. 1, n. 1, p. 105, 2017.
URL: https://www.arca.fiocruz.br/handle/icict/21100